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**20240712更新:**
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软件作者看到了这篇教程, 指出其中错误, 并对分析挂载流程提出了相当多的宝贵意见, 具体内容已整合到一篇新的[文章](https://wangzhsi.github.io/post/HapHiC-de-an-zhuang-yu-shi-yong-%28-er-%29.html), 请移步查看.
以下原文:
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[HapHiC…
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Some graph unitigs may turn out to be highly repetitive, and the phasing part never finishes on them. For example, in the dataset `nano_uni_5`, using unpolished metaFlye graph, coverage of `edge_208` …
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Hi @CamilaDuitama & @frankandreace ,
I want to mention that I did some important changes on the repository.
- kmat_tools executable does not change name, only the main pipeline script (I discussed…
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Hello!
I was trying out strainy for phasing E coli MAGs from a metagenomic assembly (ONT R10 data).
Specifically, I generated an initial Flye assembly from all reads of a complex metagenomics samp…
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Noticing the following message in the file: run_mashmap.err (8-hicPipeline folder); missing step in the workflow?
[mashmap::skch::Map::mapQuery] WARNING, no .fai index found for ../8-hicPipeline/un…
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Hi - we have generated Hifi reads from a human cancer cell line and run the initial processing on Hifiasm.
The assembly size of the primary contigs from Hifiasm (estimated genome size 3.1 Gb) is 5.6…
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Hello Xiaofei,
Thank you for developing the Haphic software.
I am currently working on the assembly of a complex polyploid genome and I am trying to scaffold the “p_utg” sequences obtained from …
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First of all, cool tool!
We're trying it to run for a large collection of genomes and first built the k-mer database using:
`kmc -k31 -m450 -fm -t30 -ci0 @paths.txt test_graph .`
And then ran cut…
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Hello,
I was trying to run the verkko 2.0 release on one of the Tree of Life insect genomes. The species is _Philedonides lunana_ with estimated heterozygosity 2.0% and estimated genome size 282Mb…
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Hi, when my program run to the step8-hicpipeline, I found the mashmap only use 8 threads and it is expected to take more than 20 days. So I modified the verkko,sh and changed the papratemeters to `fh…
ghost updated
6 months ago