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Hello,
I'm trying to run your Visium pipeline. I ran Visium_pipeline.sh on my visium sample (that employs UMI_annotator.py - which is also provided).
I get the python output and the pathseq outpu…
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Hello,
I have noticed that the there is some variability in the output of Assemblies by Flye (v2.5). I noticed this when I was using PacBio subreads as input for assembly of bacterial genomes.
I …
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### 请提出你的问题
您好！
首先感谢https://github.com/PaddlePaddle/PaddleNLP/issues/3345 中的回答。
目前在使用uie-base-en进行【实体识别和关系抽取】定制训练时效果不佳，主要指标为：
Evaluation Precision: 0.40741 | Recall: 0.16418 | F1: 0.23404
主要研判有两部…
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I don't know what I do when the mistake is: The alignment must include at least 3 unique sequences for selection methods to work. Could you help me please?
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I have a set of 100 bacterial genomes. I annotated them with Prokka and performed pangenome analysis with Roary. Roary outputs the core gene alignment file which I then used to generate a phylogenetic…
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Hello,
I am trying to assemble a small but repetitive bacterial genome with numerous linear and circular plasmids using Oxford nanopore long reads.
While using canu, I'm concerned about the read…
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Hi @rpetit3
**Is this something you would like to see added?**
It will be great to have the option `--nanohq` when performing de novo assembly in `bactopia`, just like you did in `dragonflye`!
…
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**Description**
Hi, I have tried multiple times to run the bactopia staph aureus tutorial in a docker container and am getting this java error and it is failing at the QC step. Do you have any sugg…
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Hi there,
I recently did some whole genome sequencing and tried out bactopia to assemble my genome. I followed the instructions on the page and ran into this error below. I am not sure why the pro…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD