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_From @ewels on July 30, 2018 6:8_
Singularity and docker container addresses are currently not handled in the best way. This is made difficult by the fact that we have `nfcore` on dockerhub and `n…
ewels updated
5 years ago
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Output of `curl -s cht.sh/~docker-compose` is too long, because the whole `:list` output is printed. Maybe show just a few lines of context for it?
```
[:list]
...
docker-build
docker-compose
do…
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Output of `curl -s cht.sh/~docker-compose` is too long, because the whole `:list` output is printed. Maybe show just a few lines of context for it?
```
[:list]
...
docker-build
docker-compose
do…
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As we already dropped Singularity support and only pull Docker images, we don't really need a Singularity recipe in the respective repositories. This should also be updated in the linting, as we curr…
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Currently users have the choice of 3 default Jupyter notebook environments (a.k.a. Job Profiles) to spawn up on the ORN infrastructure.
Ideally we could provide notebooks which contain the tools/ke…
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Hi,
I tried to run the nextflow pipeline for a small dataset but encountered an error.
The commands I used:
```
nextflow run nf-core/rrna-ampliseq \
-profile standard,docker \
-name "tes…
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## Bug report
If the actual `nextflow.config` file is not located in the top-level directory of a pipeline repository, but only linked there using a symbolic link, `nextflow pull` (v0.32.0) gives …
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## Link to Container Collection Log, Build, or Collection (in that order)
https://www.singularity-hub.org/collections/1285
https://www.singularity-hub.org/collections/1297
### Behavior when Build…
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## Link to Container Collection Log, Build, or Collection (in that order)
Building a container with everything necessary for the GATK4 preprocessing pipeline ( in SCIF, as opposed to their docker i…
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I got a little tired of manually rebuilding our docker image into a singularity one.
Our cluster cannot pull things from docker, as we have no rights to rebuild it it seems like ...
![screenshot fro…