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just curious,
is it possible implement something similar for trna search?
my interest : “missing” trna anticodons.
see
https://pmc.ncbi.nlm.nih.gov/articles/PMC8007984/
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Hello,
I usually run rvtest on a linux cluster, but want to add mac compatibility to my workflow. I downloaded the latest release of RVtests and am trying to run it the same way as I run it on the…
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Sorry to be an alarmist but several issues have existed for several days.
Issue 1
Load button grayed out unless a BAM or CRAM is provided. These were optional. Vcf is no longer sufficient.
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Term IRI: http://purl.obolibrary.org/obo/PATO_0040003
Definition: The ability of a pathogen to produce an infectious disease or disorder in an another organism. [database_cross_reference: https://orc…
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Hello,
It should be useful to be able to right-click on a variant in the IGV viewer and have an option to generate HGVS compliant nomenclature for a variant.
Thank you,
Dmitriy
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None of the associations between genes/variants/etc and traits show up in the various pages/tabs. This is generally a problem with the ontology not knowing how to bridge traits with UPheno. See tick…
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Hello,
I'm writing to ask your opinion about generating SNP in RNA data.
I already used DWGSIM for genomic data and finding the global position of the variants in the VCF was relatively straightfo…
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In filter there is only a research options and no Clinical_db_gene_annotation i.e. IEM/EP.
https://clinical-db.scilifelab.se:8081/#/family/108/variants?database=research&offset=1
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Hello,
The vcf that is outputted by pandora gives variant positions with respect to each individual gene. Is it possible to map the position of variants with respect to the pangenome reference?
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We need to pull a series of data to inform which genes to look for variants in.
There is a google doc here for reference,
https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollI…