-
Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
-
Many thanks for your work, picrust2 output is now way easy to analyze but I have an issue:
The proposed script seems not to take in consideration the analysis of stratified predicted metagenome, o…
-
Turnbaugh, P. J.
Ridaura, V. K.
Faith, J. J.
Rey, F. E.
Knight, R.
Gordon, J. I.
2009.
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
http://dx.d…
-
Dear Chi Liu, first of all thank you very much for such a comprehensive package.
I have been using this package extensively for my metagenomic analysis
When I tried to run RDA analysis, I get this…
-
### Description of bug
After de novo assembly of paired end Illumina reads, Spades output contigs/scaffolds that contain non-ascii characters (). The input fast files do not contain these characters.…
-
### Description of bug
Hello Good day. I am Paula Maza and currently working on a microbial metagenomics dataset. I am new to shotgun metagenomics and hoping to learn along the way. I am using SPAdes…
-
What are empirically good values for `l` and `k` when generating a custom database which is going to be used for Oxford Nanopore data?
Anyone some hints here? Would you stick to the default? I am a…
ms-gx updated
2 months ago
-
Trying to run the read filtering workflow at https://dahak-metagenomics.github.io/dahak/quickstart/#read-filtering
After setting up the environment as noted in #99 and issuing the following command…
-
Hello I tried using Racon 1.3.2 and I received the error message illegal instruction. I used bbmap to generate the sam file with merged illumina reads. If there is more information that would be helpf…
-
Hi there,
I've been running SingleM on a set of SRA files. For most of them this is fast and takes < 10 minutes. Some SRAs, it seemingly runs forever and gets stuck. This is one example of such a …