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Roughly, as a developer, or user I would like to:
# Authenticate to a phenoscape knowledgbase
* use a token or credential (Github?) to gain write access to the data-store
# Create, read, upda…
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## Overview
As discussed during the call on 2022/11/11.
For Exomiser, Here is a good place to start looking: https://github.com/exomiser/Exomiser/blob/master/exomiser-data-phenotype/src/test/java/…
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Hi SpaCET team,
Quick question regarding the Malignant Cell State A and Malignant Cell State B. Can you clarify what the differences are between these, and how they are calculated? Are they compar…
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The article I came across that utilized MTAG left me feeling very puzzled about whether I used the MTAG is correct.
1. As per my understanding, if I were to employ MTAG to simultaneously input fo…
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Hi, I'm trying to run the flow via snakemake (snakemake --cores all --use-conda ) but I get this error.
https://raw.githubusercontent.com/akcorut/kGWASflow/v1.3.0/workflow/rules/common.smk:98: Sy…
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There is an error on line 95. When you simulate environments as correlated traits you shouldn't also add varGxE = rep(2, nEnv), as this will add extra (spurious) error to the phenotypes. It will also …
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this page won't load:
http://stage-monarch.monarchinitiative.org/phenotype/FBbt:00004326PHENOTYPE
which was from the phenotypes listed on this page:
http://stage-monarch.monarchinitiative.org/gene/NC…
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from Maryann
"I think you need to be able to add phenotypes to a comparison without having to start all over again. I also think you need to be able save searches/comparisons. I’m assuming that thi…
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Based on @harryhoch's mockups, I started the redesign. The first thing I did was to clean up the page and related code. I also rephrased the section titles as you can see from the second image. In sec…
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I've been working on an example, where I want to compare a set of diseases based upon their phenotypes. I don't want the tool to tell me what is most similar (e.g. standard Phenogrid), or input a set …