-
This is somewhat a matter of taste, but most (if not all) of the current modloadmsg usage seems like it would be better to have in the module "help" message instead, or deleted entirely. Having modul…
-
Hi,
What is your suggestion to extract the representative genome for a meta_ and ext_ mOTUs?
E.g., if we download meta_mOTU_v3_12240, it downloads 4361 genomes (even if we only choose one of th…
-
1) Setup section has the Metagenomics lesson information, not the Pangenomics
2) For a local installation I would suggest providing the yaml files for the environments, instead of the individual inst…
-
Hi, I am working with very small bacterial genomes, and when trying to annotate the smallest of them using the latest Prokka I came upon a curious error.
Contigs above a certain length (120kb is OK)…
-
Dear Developers,\
Thanks for your software! I met with the following errors when running the commands using a nextflow environment created under conda env:\
\
(nextflow) [jiaguosong@dulab ~]$ nextf…
-
Hi,
it seems that there's an implicit dependency on "dustmasker" for part of the functionality, but this isn't mentioned in the README and also doesn't get installed with install_krakenuniq.sh. This …
-
For DTU students/staff that wanted to run BGCFlow on the LSF HPC facility, follow these steps:
- Access the HPC by following the guide from here https://www.hpc.dtu.dk/?page_id=2501
```bash
# g…
-
Greetings,
I am trying to map annotations made by Roary (so really annotations of CDS made by prodigal, and that's why I am asking on this page) back to a gene name for use in Gene Ontology Analysi…
-
I'm trying to run eggnog-mapper in a computing cluster that I've never used before have eggnog-mapper v2.1.10 stuck forever in the pfam annotation step. I've used v2.1.9 in another cluster with the sa…
-
Hi
I'm running Panakeia and i encounter and error, i guess is related to clustering, since I also got an error doing it
513357 finished 18243 clusters
Approximated maximum memory consump…