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### Description of the bug
Hello everyone,
I am getting the following error during the taxpasta standardise function using the data from the tutorial age:
```
Execution cancelled -- Finishing …
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https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline/blob/70025d47d2aea47043effa63f4f5d619004c9c7c/tasks/Qc.wdl#L319
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**Describe the use case that is addressed by this feature.**
There are currently nearly 700 IVSCC pipeline experiments that are failing cell QC with the fail tag "electrode_0_pa missing value". This …
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We need a "get-to-the-point" type of documentation, so anyone can run the full pipeline with minimum cognitive efforts. Doc should include:
- info about dependencies (what to install and how)
- how …
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This is an attempt to simplify the AmiGO load (using a unified ontology) and have more QC done upfront without complications in the canary build `go-ontology-dev`.
@pgaudet @balhoff I've dropped th…
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This is a complete pipeline for metagenomic analysis. The purpose of trying out this pipeline is due to the discrepancies between my Kraken2/Clark results and the company's result. Due to the fact I s…
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**Problem: the workflow run only can run correctly at the frist time ; it will be failed when with `-stub` or `-resume`**. Some process will be skipped.
**why and how to fix it? Can you give …
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When running the following command within my Snakemake pipeline:
```
porechop_abi -abi -i /path/to/inputs/18S_combo.fastq.gz -o /path/to/outputs/abi_trimmed/18S_combo_pc.fastq.gz
```
I get the fol…
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I'm trying to run PIMENTA from Clustering to Consenses (i.e. `RunModules='Clustering,Consensus'`). But, I can't figure out where in the settingsfile.txt file to point to my fastq files that I already …
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MSID: 92080
Version: 3
Preprint DOI: https://doi.org/10.48550/arXiv.2209.08066v5
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-…