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I have tried to run the STAR-Fusion Docker version and came across the same error repetitively. I figured I might be making a silly mistake and tried doing this tutorial exactly as it states with the …
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Hi,
I am trying to work with RNAseq data in the funannotate pipeline. After running `funannotate update` there are multiple CDS features with the same coordinates in my output file. When running anti…
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### Description of feature
For a list of who is utilizing the pipeline.
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
I'm working with 15 samples, with ~5Gb total reads per sample (90,000,000 to 100,…
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Hi,
thanks for making the RiboTaxa Pipeline.
The pipeline is stalling for me on my first set of reads at the emirge step.
From the stderr file. This is the error that is stopping the pipeline:
>…
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When using the -resume option, it would be helpful to see which processes are going to be run and which will be reused from the cache.
Additionally it would be useful to indicate which hashes have c…
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### Description of the bug
I'd expect to be able to lint a single local module.
### Command used and terminal output
```console
nf-core modules lint --local
```
Should allow you to select a loc…
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Hello,
first, thank you for a fantastic software that I have been using on a weekly basis since 2015 until this week when I via Anaconda cloud updated to the latest version (1.3.2). I use `STAR v2.…
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Hello Alex, I have paired-end rna-seq of 50 samples of human. I have already done the mapping using STAR and the reference file that mentioned in the documentation (https://github.com/alexdobin/STAR/b…
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**Software Versions**
$ snakemake --version
8.23.0
$ mamba list | grep "snakemake-executor-plugin-slurm"
$ conda list | grep "snakemake-executor-plugin-slurm"
snakemake-executor-plugin-slur…