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Hi there,
I just have a basic question about how PGAP identifies pseudogenes. This question comes up a lot for me and folks want a technical answer that I can't seem to find. Could you please provide…
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Hello,
I have one de novo genome and some RNA-Seq data, I want to annotate my genome as `test1.sh`, so I first run test1.sh to check if there are any errors, everything looks ok, but when I run my…
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Hi there,
I noticed that under certain cirumstances some distances are silently not computed. I assume this happens for identical entries (what exactly is identical here? `sum(df.duplicated())` ret…
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As described in email - create a GAF from the GO annotations in the *.contig files so we don't have to carry on editing in Artemis to use evidence not available in Canto. I'm rashly assuming it can go…
mah11 updated
3 years ago
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## Problem
rMATS has resolved a conflict with soft clipping. Currently, we have turned soft clipping in STAR #196 off to get around this issue. However, as soft clipping improve the accuracy of mappi…
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Currently all curation of allen markers (expresses column) uses PRo,
instead they should be using gene IDs based on what marker/gtf file is provided.
@shawntanzk to change curation to whichever gen…
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Hi, Thanks for the great software!
* pvactools version: docker images pVACtools:2.02
* Operating System: ubuntu 20.04
**Describe the bug**
When I ran pVACseq with the PHASED_PROXIMAL_VARIANTS_…
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Hi,
I annotated a whole genome using PGAP standalone package
I want to know that can i submit the processed data, i.e. results of standalone PGAP annotation in the NCBI
also the number of pseudogen…
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We got an error in CI and it said to file an issue:
```
/usr/bin/docker run --name returntocorpsemgrepagentv1_77b64c --label 6a6825 --workdir /github/workspace --rm -e INPUT_PUBLISHTOKEN -e INPUT_…
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This issue was raised before #6, but the author closed it. They said that writing the arguments of the function correctly (capitalization) fixes the error. However, I keep getting this error with the …