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building vignette in windows fails
check https://bioconductor.org/checkResults/3.17/bioc-LATEST/SpatialExperiment/palomino3-buildsrc.html
and https://github.com/drighelli/SpatialExperiment/actions…
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I'm an author of a package that uses `read10xCounts()` to read 10X Space Ranger data. I have been encountering the warning
```
as(, "dgCMatrix") is deprecated since Matrix 1.5-0; do as(., "Csparse…
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Hi,
I am facing an error that I haven't been able to resolve when running this code chunk:
spe
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Hi @nilseling
I wanted to conduct the spatial analysis (Section 12 https://bodenmillergroup.github.io/IMCDataAnalysis/performing-spatial-analysis.html) on my dataset, however when I try to do this…
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Hi Lukas, I am very excited trying out this pacakge. I am having a few problems using it. I tested nnSVG by following your code in the test section but resulted in the following error:
> test_check…
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Good morning. I get the below error when attempting to run the st.spatial.SME.SME_normalize command.
 Bioconductor package to convert any of them into Python [AnnData](https://anndata.readthedoc…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/boyiguo1/escheR
Confirm the following by editing …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/dunstone-a/QTLExperiment
Confirm the following by…
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It looks like `spotclean` is relying on `SpatialExperiment::spatialData` for pulling various data from a `SpatialExperiment` object, but `spatialData` is now deprecated and when I run `spotclean` I ge…