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Hello,
I had run cMonkey on my dataset while ago without any problem. But seems like I can't manage manage to run it again with slightly different parameters. Could you please help me? Thanks.
B…
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https://www.patricbrc.org/api/genome_sequence/?eq(genome_id,83332.12)&http_accept=application/dna+fasta
> accn|NC_000962 Mycobacterium tuberculosis H37Rv, complete genome. [Mycobacterium tubercul…
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Epicenter is reporting MYCOBACTERIUM_TUBERCULOSIS, PYRAZINAMIDE, and ISONIAZID. It should report mtb, pza and inh.
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Found in Version: 0.11-pre10
Preconditions:
There are several tests uploaded corresponding to different assays and with different results
1. Navigate to Tests
Observed:
Results such as "MYCOBACTERIU…
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Please make the following changes:
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in the page, and under the heading please change the following sentence:
"Development and validation of this Prediction classifier is described in detail in F…
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The fasta header for the dna sequences should have the same format as the protein sequences.
https://www.patricbrc.org/api/genome_feature/?eq(genome_id,83332.12)&eq(feature_type,CDS)&eq(annotation,P…
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Hi there,
The pipeline seem to run fine until I reach step 11:
Here is the error from the meta_paths_run_log.txt
![screen shot 2014-02-25 at 3 23 21 pm](https://f.cloud.github.com/assets/6787918/2264…
maepz updated
7 years ago
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AMR Annotation Modules (Option 2)
We will update the existing k-mer-based annotation software in PATRIC/RAST in order to propagate AMR-related annotations from ARDB, CARD, Resfams, and the manual anno…
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Hi,
does anyone know something about "tubercle"?
It is the location for the enzyme(s) 3.4.21.34 (plasma
kallikrein, tissue kallikrein). It seems to be a small
knob on the worm Schistosoma mansoni, bu…
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When searching with a particular combination of TF, species and techniques, not all data that appears in http://www.collectf.org/browse/search/ after clicking the _Search_ button gets incorporated in …