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farhat-lab
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gentb-site
The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens
https://gentb.hms.harvard.edu
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Bump gitpython from 2.1.7 to 3.1.30 in /requirements
#268
dependabot[bot]
opened
1 year ago
0
download a standalone version of GenTB
#267
Ankitapal1995
opened
2 years ago
6
are pipeline disabled
#266
ningesh
opened
2 years ago
1
Bump django from 2.2.13 to 2.2.28 in /requirements
#265
dependabot[bot]
closed
2 years ago
1
Bump django from 2.2.13 to 2.2.28
#264
dependabot[bot]
closed
2 years ago
1
Bump django from 2.2.13 to 2.2.27
#263
dependabot[bot]
closed
2 years ago
1
Bump django from 2.2.13 to 2.2.27 in /requirements
#262
dependabot[bot]
closed
2 years ago
1
Dropbox link upload is not working
#261
mahafarhat
closed
2 years ago
2
(bugfix): update `plt.close` to be a function call
#260
vladdoster
opened
2 years ago
2
(maint): small fixes
#259
vladdoster
closed
2 years ago
2
Add R/S label to hover box over drug/strain for Predict
#258
mahafarhat
closed
2 years ago
2
Data display while hovering over country is too large (Maps>Mutations)
#257
mahafarhat
closed
2 years ago
1
Mutations app glitches and improvements
#256
mahafarhat
closed
2 years ago
1
Display probability instead of binary resistance value when hovering over drug heatmap
#255
mgro
closed
2 years ago
3
Antibiogram app
#254
mahafarhat
closed
2 years ago
19
WDNN predict result display
#253
mahafarhat
closed
2 years ago
2
remove over sampling feature from maps > drug
#252
mahafarhat
closed
2 years ago
0
Fix oversampling correction under Maps > Country > Drug
#251
mahafarhat
closed
3 years ago
0
Bump django from 2.2.13 to 2.2.24 in /requirements
#250
dependabot[bot]
closed
2 years ago
1
Bump django from 2.2.13 to 2.2.24
#249
dependabot[bot]
closed
2 years ago
1
Mutation table on GenTB - Map shows the same letter in two columns
#248
mgro
closed
2 years ago
2
Add detected resistance variants to the predict.JSON in WDNN pipeline
#247
mgro
opened
3 years ago
2
Bump django from 2.2.13 to 2.2.22 in /requirements
#246
dependabot[bot]
closed
3 years ago
1
Bump django from 2.2.13 to 2.2.22
#245
dependabot[bot]
closed
3 years ago
1
Bump django from 2.2.13 to 2.2.21 in /requirements
#244
dependabot[bot]
closed
3 years ago
1
Bump django from 2.2.13 to 2.2.21
#243
dependabot[bot]
closed
3 years ago
1
new bug in mutation display from heatmap
#242
mahafarhat
closed
3 years ago
4
Emails to user contain contradicting information
#241
mgro
closed
3 years ago
1
Add list of minimal features needed on single end and paired end predict upload pages
#240
mahafarhat
closed
3 years ago
8
After user submits a predict job they should be notified than an email will be sent to them when the results are read
#239
mahafarhat
closed
3 years ago
1
link to user friendliness survey on predict output page
#238
mahafarhat
closed
3 years ago
2
Heatmap creation for WDNN pipeline
#237
mgro
closed
3 years ago
10
Bump django-debug-toolbar from 1.9.1 to 1.11.1 in /requirements
#236
dependabot[bot]
opened
3 years ago
0
Clean up pipeline and program descriptions
#235
mahafarhat
closed
3 years ago
3
An option to retire a pipeline
#234
mahafarhat
closed
3 years ago
2
Implement user feedback of error and quality for other pipelines e.g. single ended pipeline, VCF pipeline
#233
mahafarhat
closed
3 years ago
3
Bump django from 2.2.13 to 2.2.20 in /requirements
#232
dependabot[bot]
closed
3 years ago
1
Bump django from 2.2.13 to 2.2.20
#231
dependabot[bot]
closed
3 years ago
1
Add additional text to guide user during file upload and output exploration
#230
mgro
closed
2 years ago
5
Bump django from 2.2.13 to 2.2.18 in /requirements
#229
dependabot[bot]
closed
3 years ago
1
Bump django from 2.2.13 to 2.2.18
#228
dependabot[bot]
closed
3 years ago
1
MAPs: testing of new 12k benchmarking data
#227
mahafarhat
closed
3 years ago
2
Ensure all scripts are in the version controlled gentb-site repository folder
#226
mahafarhat
opened
3 years ago
2
center predict on landing page
#225
mahafarhat
closed
3 years ago
0
Predict PDF report
#224
mahafarhat
opened
3 years ago
5
feedback depth to the user in a user friendly manner
#223
mahafarhat
closed
3 years ago
1
Restrict check depth to DR regions
#222
mahafarhat
closed
3 years ago
1
MDR percent from WHO data is erroneously multiplied by 100,000
#221
mahafarhat
closed
3 years ago
0
Front page is lost!!!
#220
mahafarhat
closed
3 years ago
0
binarize predict heatmap based on thresholds
#219
mahafarhat
closed
3 years ago
9
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