farhat-lab gentb-site issues

farhat-lab / gentb-site

The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens

https://gentb.hms.harvard.edu

Other

8 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump gitpython from 2.1.7 to 3.1.30 in /requirements

#268 dependabot[bot] opened 1 year ago
0
download a standalone version of GenTB

#267 Ankitapal1995 opened 2 years ago
6
are pipeline disabled

#266 ningesh opened 2 years ago
1
Bump django from 2.2.13 to 2.2.28 in /requirements

#265 dependabot[bot] closed 2 years ago
1
Bump django from 2.2.13 to 2.2.28

#264 dependabot[bot] closed 2 years ago
1
Bump django from 2.2.13 to 2.2.27

#263 dependabot[bot] closed 2 years ago
1
Bump django from 2.2.13 to 2.2.27 in /requirements

#262 dependabot[bot] closed 2 years ago
1
Dropbox link upload is not working

#261 mahafarhat closed 2 years ago
2
(bugfix): update `plt.close` to be a function call

#260 vladdoster opened 3 years ago
2
(maint): small fixes

#259 vladdoster closed 3 years ago
2
Add R/S label to hover box over drug/strain for Predict

#258 mahafarhat closed 3 years ago
2
Data display while hovering over country is too large (Maps>Mutations)

#257 mahafarhat closed 3 years ago
1
Mutations app glitches and improvements

#256 mahafarhat closed 3 years ago
1
Display probability instead of binary resistance value when hovering over drug heatmap

#255 mgro closed 3 years ago
3
Antibiogram app

#254 mahafarhat closed 3 years ago
19
WDNN predict result display

#253 mahafarhat closed 3 years ago
2
remove over sampling feature from maps > drug

#252 mahafarhat closed 3 years ago
0
Fix oversampling correction under Maps > Country > Drug

#251 mahafarhat closed 3 years ago
0
Bump django from 2.2.13 to 2.2.24 in /requirements

#250 dependabot[bot] closed 2 years ago
1
Bump django from 2.2.13 to 2.2.24

#249 dependabot[bot] closed 2 years ago
1
Mutation table on GenTB - Map shows the same letter in two columns

#248 mgro closed 3 years ago
2
Add detected resistance variants to the predict.JSON in WDNN pipeline

#247 mgro opened 3 years ago
2
Bump django from 2.2.13 to 2.2.22 in /requirements

#246 dependabot[bot] closed 3 years ago
1
Bump django from 2.2.13 to 2.2.22

#245 dependabot[bot] closed 3 years ago
1
Bump django from 2.2.13 to 2.2.21 in /requirements

#244 dependabot[bot] closed 3 years ago
1
Bump django from 2.2.13 to 2.2.21

#243 dependabot[bot] closed 3 years ago
1
new bug in mutation display from heatmap

#242 mahafarhat closed 3 years ago
4
Emails to user contain contradicting information

#241 mgro closed 3 years ago
1
Add list of minimal features needed on single end and paired end predict upload pages

#240 mahafarhat closed 3 years ago
8
After user submits a predict job they should be notified than an email will be sent to them when the results are read

#239 mahafarhat closed 3 years ago
1
link to user friendliness survey on predict output page

#238 mahafarhat closed 3 years ago
2
Heatmap creation for WDNN pipeline

#237 mgro closed 3 years ago
10
Bump django-debug-toolbar from 1.9.1 to 1.11.1 in /requirements

#236 dependabot[bot] opened 3 years ago
0
Clean up pipeline and program descriptions

#235 mahafarhat closed 3 years ago
3
An option to retire a pipeline

#234 mahafarhat closed 3 years ago
2
Implement user feedback of error and quality for other pipelines e.g. single ended pipeline, VCF pipeline

#233 mahafarhat closed 3 years ago
3
Bump django from 2.2.13 to 2.2.20 in /requirements

#232 dependabot[bot] closed 3 years ago
1
Bump django from 2.2.13 to 2.2.20

#231 dependabot[bot] closed 3 years ago
1
Add additional text to guide user during file upload and output exploration

#230 mgro closed 3 years ago
5
Bump django from 2.2.13 to 2.2.18 in /requirements

#229 dependabot[bot] closed 3 years ago
1
Bump django from 2.2.13 to 2.2.18

#228 dependabot[bot] closed 3 years ago
1
MAPs: testing of new 12k benchmarking data

#227 mahafarhat closed 3 years ago
2
Ensure all scripts are in the version controlled gentb-site repository folder

#226 mahafarhat opened 3 years ago
2
center predict on landing page

#225 mahafarhat closed 3 years ago
0
Predict PDF report

#224 mahafarhat opened 3 years ago
5
feedback depth to the user in a user friendly manner

#223 mahafarhat closed 3 years ago
1
Restrict check depth to DR regions

#222 mahafarhat closed 3 years ago
1
MDR percent from WHO data is erroneously multiplied by 100,000

#221 mahafarhat closed 3 years ago
0
Front page is lost!!!

#220 mahafarhat closed 3 years ago
0
binarize predict heatmap based on thresholds

#219 mahafarhat closed 3 years ago
9