-
Hi,
Thanks for develop this aligner.
In the paper I have read that you tested the lra-Sniffles combination for SV detection, I am wondering how is the compapability between lra and SVIM?
Thanks,
Ch…
-
Hi @hasindu2008,
f5c eventalign throws the following error when trying to use the RNA model (r9.4_70bps.u_to_t_rna.5mer.template.model ):
```
[set_opt_profile] max-lf: 5.0, avg-epk: 2.0, max-ep…
-
ABySS 2.2.5
Ubuntu 20.04.1 LTS
Genome Size: about 0.8Gbp
Coverage: about 60x
Data: Illumina 150bp paired-end, good quality runs
I have a couple of fish genome assemblies to do. All the fish h…
ms-gx updated
3 years ago
-
We had discussions with Anders @andand, Daniel @erikrikarddaniel and Jeanette @jtangrot adding this on the Stockholm hackathon.
It would be an additional path to the existing ampliseq workflow f…
-
Hi,
The pipeline stops midway at the polishing cluster step. It does not error out or killed, it simply hangs randomly after polishing some clusters. If I run just the polish cluster step multiple ti…
-
Whilst we are looking at concordance of Nanopore variant calls to the COMPASS Illumina calls, it is also important to remember that COMPASS itself is not necessarily "truth".
As we have high-qualit…
-
Very cool tool !
Would be even cooler for us if it was also :
-Reporting how many reads he discarded in its log
-Filter the reads out of a given sequencing summary too (the sequencing_summary bei…
-
Hi @marcus1487
I wonder if it could be easy to add info about the position _in the read_ (aside from the position in the reference) for the per-read variant and modification calls. This would be v…
-
Hi,
I want to use metontiime in order to prepare the 16s reads from nanoporre to analysis in qiime 2 ( The final goal is to receive alpha and beta diversity and analysis of qiime 2 and not only the a…
-
We will look at two different kinds of concordance:
1. Positions where COMPASS says ALT, how often does `bcftools` on nanopore agree?
2. At all positions where COMPASS "makes a statement", how often d…