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Hi, I want to assemble a final set of transcripts from multiple tissues, But I have a question. Should I first assemble transcripts for each sample, then merge the transcripts from the same tissue? Or…
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Having difficulty converting h5Seurat to Anndata.
Had similar issues to #27 in the SaveH5Seurat step(), resolved by FindVariableFeatures() suggestion.
Now having issues with the Convert() step:
```…
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Hello!
I've been having issues adapting bulk rna seq data into cellchats pipeline. I want to compare the bulk rna sequencing reads of three purified celltypes with one purified celltype, and find w…
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Thank you for your amazing work!
I want to try this model as soon as possible, but I find that some files in the tutorial are missing.
Have the trained model weights (ckpt files) been released? If …
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…
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Hello, thank you for providing such a convenient method, I would like to know if the input bulk transcriptome data must be count? Can I use tpm as input?
thanks
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There's an example notebook in draw_rna but it should be Co-lab runnable through `pip install` of the library and should sit in main directory.
Also need to consolidate draw_rna repository into sin…
rhiju updated
4 months ago
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Hi,
I have a dataset of NSCLC tumors that have both been whole-exome sequenced and RNA-sequenced. I have some more samples for which I only have DNA so I wanted to use ExTRECT to predict the T cell…
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https://mattermost.incubateur.net/betagouv/pl/1yd8hp9ydjfkbkb43ycdxffj7y
rna : W922012428, année 2020, prod et préprod
Piste: modifier le mapping clôturé vers accordé
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Hi.
I found there is pretrained model for DNA model under
/models/mGru_flipflop_remapping_model_r9_DNA.checkpoint
but, is there any RNA model (model weight, or check point) for RNA?
Tha…