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Thank you for the great repo!
I am trying to predict a heteromer (format: ABC) with custom a3m.
I wonder what would be the correct format of the a3m file in such a case.
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S3 AIP storage methods expect the AIP location to be in currentlyProcessing/ingest/, so we get a "file not found" error when it's moved to completed. You can see the affected code in the verify_aip.py…
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## Expected Behavior
This is my input.csv file:
```
id,sequence
heterodimer_2,MAAEAWRSRFRERVVEAAERWESVGESLATALTHLKSPMHAGDEEEAAAARTRIQLAMGELVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAG…
Nuta0 updated
3 weeks ago
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I already solved problem #17 about UniRef30 database.
(by changing folder name UniRef30 into uniclust and changing UniRef30_2021_06 into UniRef30_2020_06 in make_msa.sh)
However, I got another err…
ILUT1 updated
8 months ago
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Hi, I`am running the script prep_mmseqs_dbs.sh.
I`ve done the corrections in script changing tar2exprofiledb to tsv2exprofiledb.
but the script extract the files and return the following error:
…
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The query sequence in the A3M format should be gapless as discussed in #96. The `hhstuite` provides a script [reformat.pl](https://github.com/soedinglab/hh-suite/blob/master/scripts/reformat.pl) capab…
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Hi,
I am trying to run RoseTTAFold using the command line ../run_e2e_ver.sh input.fa e2e-test , but after some time I get the error shown bellow. Is it there a way to fix this issue?
Thanks in adva…
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Dear RoseTTAFold Team,
Hi, I'm a user!
I tried to predict a large protein (>2500 amino acids) using RoseTTAFold in Linux server.
But, I got this message.
[log/make_msa.stderr]
```
.…
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Hi,
I'm trying to use hhsearch with a customized database. Both query and database alignments represent an entire family of homologs (there is no seed sequence). Hence, I reckon that -M 50 parameter …
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If you run `colabfold_search` with `--use-templastes 1` option, it will generate a single `.m8` file containing the template hits as well as MSAs. I am wondering how I can make `colabfold_batch` to us…