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Ontologies that are not currently marked with a URI for biological objects
- [x] FMA (Foundational Model of Anatomy)
- [x] PCO (Population and Community Ontology)
- [ ] TAIR (The Arabidopsis Info…
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This is an "epic" issue, just as a placeholder to reference various efforts towards standardizing synonym type definitions across the OBO Foundry
## Background
These are the two precursor discus…
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Anatomy associations are misleading. These include GO annotations. For example, S. cerevisiae has expressed in nucleotide-excision repair factor 3 complex
Which seems strange? (it's part_of, not an ex…
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HCAO is described as
Mammalian anatomy and cell type terms from Uberon and the cell ontology;
Human-specific labels from the Foundational Model of Anatomy
HCAO pulls in FMA labels, (e.g. Hand…
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Needs clarification:
Is this referring to a hypocotyl? If so we have the existing term seedling hypocotyl anatomy and morphology trait [(TO:0000769](http://purl.obolibrary.org/obo/%28TO_0000769)): A …
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Deploy a terminological browser with a small set of cancer-related ontologies. Candidate ontologies are:
- NCIt
- MONDO
- HPO
- Genotype Ontology
- Environmental and Exposures Ontology
- Uber…
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Per aim 1 of R24 renewal [here](https://docs.google.com/document/d/1s5waFXyzyYz8oZe6MYZ4WwTb1BzdTgki-PiQ7JTmRfE/edit)
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Protege 5.0.0 build beta-15 / snorocket 2.7.4 / IHTSDO alpha anatomy 9/2014.
After classification, query: rPartOf some humerus
Throws exception
ReasonerInternalException: Expected a named class, got …
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I suggest new childs of spikelet anatomy [(TO:0000657](http://purl.obolibrary.org/obo/%28TO_0000657))
- glume shape - [(PO:0009039](http://purl.obolibrary.org/obo/%28PO_0009039))
- internal hairs
R…
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The anterior nares subsite is not part of the nasal cavity. `nose` and `external nares` are both parent terms in the Uberon Anatomy Ontology ([link](https://www.ebi.ac.uk/ols/ontologies/uberon/terms?i…