-
Hi,
Thank you for providing this software. I have some questions about its usage that I was hoping you might be able to answer.
1. In the tutorial, bdat_initial is the gene x sample matrix for…
-
Please check that the term does not already exist by using the ontology search tool OLS:
https://www.ebi.ac.uk/ols4/ontologies/cl
--> not available
**Preferred term label**
astrocyte-restricte…
-
Hi Aleksandr,
I just tested your sc-type method on my dataset (https://pubmed.ncbi.nlm.nih.gov/37217978/) and it works really nicely for most cell types. So thank you for that! I am showing below my…
-
I de-convoluted 12 bulk RNA seq samples of brains from mice subjected to stroke. Each brain was separated into two hemispheres (Ipsilateral where ischemia took place and we expect neuronal death and …
-
Dear all,
I face a problem that reveals the different results between online server and R software.
The results of online servser:
| X868N | X879N | X888N | X1…
-
when i run this projection: https://nemoanalytics.org/projection.html?projection_algorithm=pca&multipattern_plots=0&projection_source=f61159d5&layout_id=f1b93141&projection_patterns=FC
for this dat…
-
**Describe the bug**
When I try to validate a manifest (attached [here](https://sagebionetworks.slack.com/archives/C01ANC02U59/p1652918321497479?thread_ts=1652914628.241799&cid=C01ANC02U59)) the DCA …
-
Hi,
I'm really sorry to bother you again. When I mapped the total cell interaction network(**Circleplot**), the effect of presentation were poor because there were too many cell types. So, I was wond…
-
## Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.
### Problem
I would like to estimate the proportion of cell types in each spot.…
-
**Description**
The read_tiff function seems like it will error for any non-imagej formatted image written by tifffile -- and perhaps any non-imagej tiff whatsoever -- as tifffile's read function wil…