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As a bioinformatics analyst I want to generate a BED file from a gene panel for genomic test analysis so that I can use it as an input to an NGS pipeline tool.
- [ ] Get gene panel from panelapp, ref…
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Complex bioinformatics workflows usually have dependencies from one step in a workflow to the next. Is there functionality in the pipelines API to handle this? If not, any suggestions on implementat…
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Hello developers,
I updated from v1.3.0, which I had been using for some time, to v1.4.3 and encountered an issue running the pipeline on a SLURM cluster. Looking at the SLURM *.out log files we ha…
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The README should include the source of a simple Biokepi pipeline (align FASTQs, call germline variants) and link to a tutorial which highlights the use of common bioinformatics tools.
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…
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![snippy4](https://user-images.githubusercontent.com/5425346/54983830-431b1000-4fb6-11e9-906c-1ffcb1e3f703.png)
## Describe the bug
I have created a pipeline plugin and deployed it to an IRIDA insta…
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We have several openings now for cBioPortal across different institutions. Let's add a page to help advertise them in a single location:
Location: United Sates. **Remote and hybrid options** availa…
inodb updated
4 months ago
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Hello,
First of all thanks for the code and package! It is something I've been thinking of and trying to do, and love to see there have been work done in the past.
For the input OTU table, I wa…
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Hi!
I am opening my previous ticket again! Once more I listened to some talks in ESHG Vienna and I believe we should have these tools implemented in our analysis pipelines.
As I mentioned previ…
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As Bernie suggested, we should contact the fastQC peeps and see if they're interested in the work we're doing, whether they have suggestions for features/pipeline'ing/whatever and anything else.
Thei…
Kiwwa updated
9 years ago