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1. Question1: when I use mCaller call 5mC meth but I haven't 5mC model file, do you have 5mC train model to use ? the code like this :
`mCaller.py -m GATC -r reference.fa -e human.0.eventalign.ts…
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Clean up old code in Geoduck meth repo, only include scripts that were used in final bioinfomatics analysis
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Hi @heathsc
I'm using BSCall software to detect some variants from whole genome bisulfite sequencing data.
My version of bs_call is 2.1.7
When I tried to compare the result of BSCall and NA1…
tahuh updated
2 years ago
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Hi,
I have some naive questions.
1. In biscuit align setting `-b 1` aligns read1 and read2 to both strands. Is this the one recommended for non directional libraries ? I see bismark has `--non_d…
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Hi Dinh,
I'm running your tool to extract methylation haplotypes from bam files, and I'm currently comparing the reads displayed in IGV with the methylation haplotypes generated from your tool. I'm…
caalo updated
6 years ago
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Hello there,
I re-post an issue I posted in DeepMod regarding future plan to include detection of other methylation motives in plant. Hope it can be one of the new development included in DeepMod2. T…
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Hi all, @FelixKrueger @ewels
I tried to run the pipeline with some data, but I had no idea about how they have been produced. I know just that they are methylation data. SO when fastqc run, I saw …
ewels updated
5 years ago
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Hi, thank you for building this fantastic package! Just wondering how can I build design.rrbs for my own dataset. I appreciate your help!
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Thanks for developing this tool for ceDNA analysis. I have some bam files from generated from WGBS data and am wondering if AmpliconSuite is able to use these bam files as input for ceDNA detecion? If…
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Hi,
I am checking MHL values of my BAM files and see something unexpected. The sample BAM I can share holds alignments of amplicon bisulfite sequencing of five regions to a very high depth (5000-5000…