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Hi!
I have two questions about the sc reference:
1. Is it ok to us data from different species, i.e. mouse sc data to deconvolute human bulk?
2. Is it ok to mix sc data from different labs/pub…
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I de-convoluted 12 bulk RNA seq samples of brains from mice subjected to stroke. Each brain was separated into two hemispheres (Ipsilateral where ischemia took place and we expect neuronal death and …
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Hi,
Thank you very much for putting together this code.
I would like to better understand when Bulk2Space might help versus when there are limits to applicability to Bulk2Space, following a jour…
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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…
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https://github.com/LieberInstitute/Human_DLPFC_Deconvolution/tree/main
Add datasets to package:
- [x] Bulk RNA-seq
- [x] RNAScope proportions
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https://mp.weixin.qq.com/s/rK7FFQuEPKpEU6qYbVB4Rw
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https://mp.weixin.qq.com/s/ONYpoNdRjMXUsRQurKBDZg
ixxmu updated
2 weeks ago
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Hi Onur,
This is a fascinating study on the deconvolution of bulk RNA-seq in AML. I am a postdoctoral researcher at the Chinese Institutes for Medical Research (CIMR).
Your code serves …
pyebo updated
3 months ago
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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Hi,
I notice that the Ecotyper_Recovery_bulk.R function, recovers multiple discovered carcinoma cell states (published in the cell 2021 ecotyper paper) from bulk RNA-seq data. I'm not so familar with…