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- cBioPortal (or other sources e.g. Ensembl, RefSeq) downloads will be on the hivelab server: /data/shared/biomuta/downloads/cbioportal
- scripts will be here: /data/shared/biomuta/pipelines
- datas…
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Some scripts used to import data from the seed DB have been moved to cbioportal-core but still reference properties files in the main cbioportal repo. Enable them to be run via building the cbioportal…
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FInd out if it is possible to run cBioPortal on SC and be able to share it with a researcher that has gone through negotiation
- [ ] Study cBioPortal especially [cBioPortalOnDemand](https://europdx.g…
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Right now redirect_uri always uses http. This causes issues when using e.g. microsoft authentication. One needs to then specifically set `--proxy-base-url` to https e.g. https://github.com/knowledgesy…
inodb updated
1 month ago
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I followed https://docs.cbioportal.org/deployment/deploy-without-docker/load-sample-cancer-study/ to import study but running into the database migration issue.
Steps to reproduce:
1. `export PORT…
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**Background**:
cBioPortal uses the React JS framework to aid in the reusability of components. Some cBioPortal components (i.e., clinical timeline) have been built with the goal of reusability, b…
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**Background**:
- cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…
inodb updated
7 months ago
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Customize IGV 2.0 to meet Patient and Study pages' needs
- [x] https://github.com/cbioportal/cbioportal/issues/5700
- [x] https://github.com/cbioportal/cbioportal/issues/4348
- [x] https://github…
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**Background**:
- [Genome Nexus](https://www.genomenexus.org/) is a comprehensive resource integrating variant annotations from more than a dozen sources relevant to cancer. The annotations can be a…
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We need an api to determine whether alignments exists at all for a given transcript so that we don't have to pull all alignments just to determine that.
After discussion, we would like to add pagin…
jjgao updated
5 years ago