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I've tested this script, and I believe it should work to get the Manubot responses into the format I need:
python script
```python
"""
adapted from: https://github.com/greenelab/lab-website-te…
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Do we have any roadmap or timeline to release cell-type eQTL identification based on RNA-seq deconvolution within GTEx samples?
Thanks
Shicheng
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Hello,
Can you please point me to the code from your repository which you use to create Fig 2b in your paper "Genetic identification of brain cell types underlying schizophrenia "
Thanks
Ana
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- [x] Introduction - scope 0.5-1 page
- look into reviews
- broad overview into the field
- mention nature methods "method of the year 2020"
- define axis: targeted/high-resolution vs unbiased…
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The vignettes would benefit a lot from addition of prose from the manuscript that provides context for what the dataset provides and how it can be used. For example, if someone is looking for a datase…
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hi
I am trying to use this tool but installation is real hurdler can you please provide the yaml file
i tried with all the dependencies but getting this error
import-im6.q16: unable to open X …
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I am working with the human fetal reference, but my dataset is only comprised of a subset of tissues.
So I wanted to filter the reference dataset to only the cell types of interest before annotatin…
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Posting this to document the current state of the microalgae collections data:
We need to ask NEON for collector information.
We should not be traveling around the sample tree for preservative …
kyule updated
2 months ago
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Dear all,
This issue compiles all the diseases from the unpublished USIDNET 2024 list for which MONDO codes have not yet been identified:
- The diseases listed below correspond to those marked in …
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Hi @eric-czech ,
I uploaded some files to the google storage bucket showing both good and bad annotations. There are some problems with the classifiers for cells, digits, and (I believe) markers, …