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Hello, thanks for building this great tool and for your answer https://github.com/jinworks/CellChat/issues/83 . Follow up question regarding Visium data, what do you recommend be done for datasets whe…
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Hi,
I am trying to plot expression of multiple genes or probability of multiple celltypes in a single slice, as provided by celllocation.
![notebooks_cell2location_tutorial_48_0](https://user-im…
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hello, thank you for making this great tool. I cannot seem to understand how to use it.
I have differentially expressed genes from findmarkers() in seurat between diseased fibroblasts and control fi…
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### Version
Yosys 0.34+23 (git sha1 59fbee400, clang++ 11.1.0 -fPIC -Os)
### On which OS did this happen?
Linux, macOS, Windows, BSD
### Reproduction Steps
Look into `kernel/celltypes.h` where fo…
povik updated
9 months ago
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Hi authors,
I am wondering what metric could be used to compare the same peak-to-gene linkage across different cell types? According to the tutorial, "the Shapley values converted to z-score are an…
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I am following the "Build and map against a human MTG PatchSeq taxonomy" example and trying to map human patch-seq data against AIT15.2 with the latest scrattch-mapping docker image (scrattch_mapping_…
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As demostrated below:
```
hs3163@node57:/mnt/vast/hpc/csg/snuc_pseudo_bulk/eight_celltypes_analysis$ cat /mnt/vast/hpc/csg/snuc_pseudo_bulk/eight_celltypes_analysis/8_celltypes_script_3 | grep sos …
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Current analysis pipelines only include celltypewise footprinting analysis. However, if the object is to investigate how a single gene is regulated during some import biological process, there's no ac…
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Have just updated fafbseg and run into the following error when querying an annotation table:
```
cct=flywire_cave_query(table = 'cambridge_celltypes')
Error in py_get_attr_impl(x, name, silent…
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## working pipeline
identify-celltype.sh merged.harmony.rds icell
icell/celltypes.txt # chosen cell types
/meta.txt # celltype calls