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When I run the test, whether `cd test_circompara/analysis
../../circompara2` or `cd test_circompara/analysis_se
../../circompara2` , it reported this error.
I install circompara2 in conda python=2.…
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Hello, I have the following error:
scons: *** [samples/S4/processings/circRNAs/tophat_out/accepted_hits.bam] Error 1
which appears during the tophat process.
Indeed I have the following:
[2023…
npont updated
9 months ago
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**Describe the bug**
DCC quits when trying to combine individual circRNA read counts. This is only when I run it using a docker in an interactive queue:
bsub -Is -q research-hpc \
-a 'docker(budde…
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First, thanks for creating this useful tool for circRNA research! :)
as discussed at GCB 2019, here a small yet really helpful feature request!
the idea here would be to include a parameter to a…
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Hi,
A couple of questions:
- Do any dep files exist for mouse / how to generate these?
- I see Execution halted, but completed results files. Whats going on there?
Best wishes
Alistair
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…
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[Franzi]
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Thanks for your great tool
I hope to know how to make the bowtie2 index of circRNA junctions and the STAR index?
Thanks a lot
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Hello !
I'm new to using this tool. After using the command., An exception keeps raising. Kindly look into it.
This is the command used.
python3 seekCRIT.py -o AC16_PEtest -t PE -fa /STORAGE/softwa…
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Hi SO,
There are a few tweaks needed for the entry for circular_ncRNA, originally discussed on #490.
http://www.sequenceontology.org/browser/current_svn/term/SO:0002291
1. For synonyms, convert "…
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When using CIRIquant, we are recommended to use CircAtlas to obtain files like GTF files, reference genomes and whatnot.
Are the sequences of circRNAs present in CircAtlas total or partial?
How is …