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How can I store phylogenetic trees in my anndata file object?
Here's the code:
```py
import gzip, requests
import anndata as an
import ete3
from Bio.SeqIO.FastaIO import SimpleFastaParser
…
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We plan to expand our catalogs of tutorials for whole-genome microbiome data analysis.
Here are some ideas we will implement:
- Expand the introduction slide deck to add more overview of the diffe…
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I have tried running scaffold a few times on a sample, and I keep getting an error. The details are below.
During scaffold, the following command failed with return code -11:
> > /opt/metAMOS/metAM…
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A couple of members of my lab and I have been getting very different results when using qiime2 versus phyloseq for calculating weighted unifrac values. It seems that the default parameters used by the…
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The `aggregate_*` methods, when dealing with missing taxonomic information return the entire row where there is information combined as shown below.
```
library(jeevanuDB)
library(microbiome)
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Evolution of Ambassadors program to support metadata standards
The initial year of the Ambassadors program focused on spreading awareness of data standards and their
central role in enabling findable …
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Evolution of Ambassadors program to support metadata standards
The initial year of the Ambassadors program focused on spreading awareness of data standards and their
central role in enabling findable …
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Hi, I tgot following error after calling python from Reticulate, please help
mofa1
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@mslarae13 @cmungall @sierra-moxon @aclum
This issue describes a technique I can use to infer `env_package` annotations for Biosamples that don't have one, which in turn should improve the `env_lo…
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Thanks for your useful tool.
I want to predict the functional group with discrete case. When I run EQO_ga("d",Microbiome,trait_d,maxIter = 100), propoer results are obtained. But when run the comman…