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hi guys - i didnt want to start tons of tickets for these, so im putting them together here - let me know if youd like me to do this differently:
1]
in link: "https://nemoanalytics.org/projectio…
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when i use biomaRt to transfer IDs, this error emerged recent days, could you please help me
`getBM(filters = 'uniprotswissprot',
attributes = c("hgnc_symbol"),
values="P0…
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From MapURL
"primaryTopic": {
"_about": "http://www.uniprot.org/uniprot/P56817",
"exactMatch": [
"http://identifiers.org/ensembl/ENSG00000265969",
"http://identifiers.org/ensembl/ENST…
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Need to run a script to consolidate the Ensembl databases in gk_central
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Line 180 of prot/utils.py truncates mouse ensembl ids. Current code: ```transcript_ids=ensembl.transcript_ids_of_gene_id(gene_id[0:15])```
This will result in all of your ensembl Ids to be "not found…
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Hi @smsrts,
Thanks for the updated ericscript.pl
I ran `ericscript.pl --printdb` and it's taking forever.
Output:
```
Selected Ensembl version: 1
Installed Ensembl version: No database i…
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Thank you for developing this useful tool. Do you have any plans to update it based on the 2023 release of MSigDB?
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Hi , I'm following the tuto and got error
```julia
counts = load_counts(sample_paths; sample_names=["P1","P2"])
┌ Warning: ID "CD34" is not unique. Use duplicate_var=x, where x is :error, :warn o…
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Hi,
Regarding the @tropfenameimer comment on the build of Gallus gallus cisTarget database issue #4, I tried to take similar steps for building pig cisTarget database.
First, I got the regulato…
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**Is your feature request related to a problem? Please describe.**
data=ov.bulk.Matrix_ID_mapping(data,'ref/genesets/pair_GRCh38.tsv') left with over 20k+ unconverted gene ensembl ids (h.sapiens, Grc…