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Hi,
Can multiple fastq files be used as input? E.g. fastq files from different lanes?
Thanks.
Br,
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Hi Saskia!
Hello from Canada!
I am using Decona to genotype some amplicon data and I have run into some trouble.
First, I was able to run the example data with no problem.
But, with, my …
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### Problem Description
@jmtsuji This code fails.
```markdown
# For the long read data, to get the quality scores (i.e., not SRA Lite format), you will need to use the SRA Toolkit
# availab…
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I used the trust-barcoderep-to-10X.pl to transform barcode_report, and got two questions:
1) Why are the numbers of umis and reads exactly the same in the results?
2) The raw_clonotype_id and raw_c…
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Hello,
Great tool. Super useful. Especially one SRX deal with all SRRs is a life saver. Many thanks.
I have two scRNAseq datasets. I shared the examples below. I am strictly running my fastq-dl …
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Hello, I am trying to remove rRNA reads from my RNAseq data. I am running your program on a remote compute cluster. I only ran one set of paired reads to make sure everything was functioning properly.…
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Hi,
I encounter an error when running nanoq on multiple fastq.gz files (from one barcode) with their generic Nanopore names, it usually tells me that file *_10.fastq.gz isn't valid in this context.…
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The command should run Crispresso and create the outputs of the Crispresso batch file, however it is giving out a numpy error instead. @shayanhoss
**CRISPResso command to reproduce the behavior:**…
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Hi, I've tested the [Kallisto-Quant.cwl](https://github.com/common-workflow-library/bio-cwl-tools/blob/release/Kallisto/Kallisto-Quant.cwl) with
```yaml
InputReads:
- class: File
path…