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esteinig
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nanoq
Minimal but speedy quality control for nanopore reads in Rust :bear:
MIT License
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Nanoq on multiple compressed fastq.gz files
#46
RommerskirchenA
opened
1 month ago
2
quality report vs length report
#45
Hedi65
opened
2 months ago
1
Read quality thresholds (Q)
#44
Hedi65
opened
7 months ago
1
total input read report
#43
esteinig
opened
8 months ago
0
stdout compression auto detection
#42
esteinig
opened
8 months ago
0
Using nanoq for PacBio reads
#41
krausfeldtle
closed
8 months ago
3
Allow empty file flag
#40
esteinig
opened
10 months ago
0
Ambiguous base filter
#39
esteinig
opened
11 months ago
2
0.10.0
#38
esteinig
closed
1 year ago
1
Refactor `u32` to `usize`
#37
esteinig
closed
1 year ago
0
Implement head/tail read trimming
#36
esteinig
closed
1 year ago
0
Compression inference from file extension for writing to STDOUT
#35
esteinig
closed
1 year ago
1
Add filtered read count to JSON output summary
#34
esteinig
closed
1 year ago
0
Optional length / quality outputs per read
#33
esteinig
closed
1 year ago
0
Report outputs
#32
esteinig
closed
2 years ago
4
Send summary stats to stdout
#31
mbhall88
closed
2 years ago
9
JSON output format
#30
esteinig
closed
2 years ago
0
Header option for default summary output [#3]
#29
esteinig
closed
2 years ago
3
Option for second read file (Illumina)
#28
esteinig
closed
2 years ago
1
Mean read qualities
#27
esteinig
closed
2 years ago
0
Better tests for filters
#26
esteinig
closed
2 years ago
1
Max quality filter
#25
esteinig
closed
2 years ago
1
Longest and shortest reads switcheroo
#24
esteinig
closed
2 years ago
0
`u64` for base count
#23
esteinig
closed
2 years ago
0
Update info regarding conda installation
#22
druvus
closed
2 years ago
1
FASTA statistics is not handled properly
#21
cgjosephlee
closed
2 years ago
3
[JOSS Review] Differences from filtlong
#20
bovee
closed
2 years ago
4
[JOSS Review] Other comments
#19
natir
closed
2 years ago
4
[JOSS Review] Code quality comment
#18
natir
closed
2 years ago
2
[JOSS Review] Paper comment
#17
natir
closed
2 years ago
16
Adopt rust-bio functions to rust-bio-tools
#16
esteinig
closed
2 years ago
1
Fixed upper thresholds
#15
esteinig
closed
2 years ago
1
Unified fastx_reader for crab-cast function
#14
esteinig
closed
2 years ago
1
BioConda release
#13
esteinig
closed
2 years ago
2
Implement auN
#12
esteinig
closed
4 years ago
1
Conda upload
#11
esteinig
closed
4 years ago
1
Add read N50 to summary
#10
esteinig
closed
3 years ago
1
Distributions
#9
esteinig
closed
4 years ago
11
Summary stats on filtered
#8
esteinig
closed
4 years ago
1
stdin / stdout
#7
esteinig
closed
4 years ago
8
Tests
#6
esteinig
closed
3 years ago
1
Implement proper writing with bio::
#5
esteinig
closed
4 years ago
5
Output logic
#4
esteinig
closed
4 years ago
0
Basic summary statistics
#3
esteinig
closed
2 years ago
5
Speed of average quality computation
#2
esteinig
closed
4 years ago
0
Buffer size limit in IO
#1
esteinig
closed
4 years ago
1