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As Bernie suggested, we should contact the fastQC peeps and see if they're interested in the work we're doing, whether they have suggestions for features/pipeline'ing/whatever and anything else.
Thei…
Kiwwa updated
9 years ago
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Kiwwa updated
9 years ago
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We are trying to use the fastqc docker installed on a server. Using
a computer with windows and PuTYY we have no problem, but from Linux
and Mac OS we can not use fastqc.
#From the local computer…
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## Versions
`snakemake` version 8.10.7
`snakemake-executor-plugin-slurm` version 0.4.4
`snakemake-executor-plugin-slurm-jobstep` version 0.2.1
## The problem
I am working on getting `snakemake`…
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Not sure everything that should be in here - but a place hold for this feature request.
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## Bug report
For a failed job in my Nextflow pipeline, I'm manually running bash .command.run and I'm getting `ln: failed to create symbolic link 'DIRECTORY_NAME/FILE_NAME.txt': File exists`.
…
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
### …
ghost updated
1 month ago
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- Better explain results when they are flagged
- e.g. what does this mean, what is to be done
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I think we need to revisit our trimming parameters for ThruPlex NGS16S libraries (more an issue for the clampi pipeline than this one). If it's straightforward to do, it might be helpful to preserve t…
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Hi
So after all settings in config.yml
I ran
python3 run_Wochenende.py arpit_R1.fastq --aligner bwamem --readType PE --metagenome 2021_12_meta_fungi_human_masked --threads 144 --no_abr…