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Followed on from #305
- spellchecking (e.g https://github.com/FlyBase/flybase-ontology-scripts/blob/master/misc/obo_spellchecker.py)
- punctuation
- correct casing (e.g. https://github.com/cmung…
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FlyBase lookup & check already working. Just need to extend to add new feature node.
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unicode ``` ``` a.k.a ```\xa0``` is breaking pub load
causing error:
```
/opt/VFB_neo4j/src/uk/ac/ebi/vfb/neo4j/neo4j_tools.py:148: UserWarning: {'code': 'Neo.ClientError.Statement.SyntaxErr…
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The following query produces a standard FLyBase linkout table with 1-2 links per FB construct.
```cql
MATCH (f:Feature)(s:Site { short_form: 'FlyLight'})
WITH f, ep MATCH (ep)
#FlyBase ID…
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In [OLS](https://www.ebi.ac.uk/ols) it is possible to specify linkouts from xrefs and to display reference images. We should take advantage of this to get links to VFB and to supply reference images …
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Dear all,
The proposal has been made to obsolete GO:0019933 cAMP-mediated signaling
Annotations are here:
https://docs.google.com/spreadsheets/d/1FbtqczOsSDcXydGOk6ydTj6Ux4y_BfaCG9v6ejy2HWQ/e…
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some flybase phenotypes are not mapped to their relevant FBbt or any other ontology classes.
for example. there's an annotation between a genotype and the phenotype `adult abdomen & macrochaeta | an…
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The Monarch Data meeting of 22nd June 2023, reviewed the need for quality assurance in the capture of Monarch graph edge evidence. We wish to:
- [ ] Clarify how to apply the current Biolink Model (…
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While I find the lists of TF names here (https://resources.aertslab.org/cistarget/tf_lists/), I cannot find anywhere which genes / motifs these TFs correspond to. I'd like to associate each TF in the …
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Dear all,
The proposal has been made to obsolete:
GO:0015680 protein maturation by copper ion transfer
GO:0097428 protein maturation by iron-sulfur cluster transfer
GO:0110147 protein maturatio…