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### Description:
As a user, I want to see gene fusion data provided for PDXFinder models.
Jira ticket [PDXI-731](https://www.ebi.ac.uk/panda/jira/browse/PDXI-731)
created a new data collectio…
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Add 7316-1106 and 7316-3000 back to hope subcohort, except for proteomics. Use the attached file from Pei.
[master_11032023 (1).txt](https://github.com/user-attachments/files/15892642/master_11032023…
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Hi,
I was wondering if Star-Fusion can report gene fusions when the gene name is not available in the annotation gtf file used. In other words, would the gene fusion be reported with gene ID or would…
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Is there a way to use FusionInspector so that all fusion gene candidates are written out without filtering? max-sensitivity and extreme-sensitivity are still cutting some fusions out
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Dear developers,
I found data containing FusionName like `CTSC--CTSC(13553)/GAPDHP70(34942)`, how should I understand here CTSC twice and `13553`/`34942`?
Best,
Shixiang
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Hi Alex,
I am trying to detect gene fusion by chimeric alignment. I set the --chimSegmentMin as 15. But in the chimeric.out.junction file, there are still some alignments like this.
chr14 928537…
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Thank you for creating a nice software!
I'm wondering if it makes sense to exclude genes with poor prediction accuracy from prediction model as it could be noisy information.
Do you have any idea?
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Related to cBioPortal/cbioportal#6759, we should also add a chart for SV data, such that you can select a gene and get a chart of all the fusion partner genes for that gene
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Hi-again,
While I'm trying to solve my issue with conda and STAR-Fusion installation, I ran it in my global environment :
`(base) NJEANRAY@OCS-NJE:~/Gene_Fusion$ mkdir -p /tmpdata/XXX/YYY/TX/V1…
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1) For umbrella variant fusion names where the fusion partner is unknown/unspecified we prefer the style "GENE Fusions" or "GENE FUSIONS" (e.g., ALK Fusions). I see all combinations of "GENE Fusion", …