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I want to use this command to finifsh function enrichment,using hallmark dataset,but whatever I write ,always report an error.
I tried h/H/hallmark,always report thee error.
+ ht2
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Dear Guangchuang,
Big fan of all the R suites your group develop!
I have a question regarding the universal gene list used in the `enricher` function for the Over Representation Analysis.
Test …
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When runnung the `plotEnrich` function by default it takes the 'P.Value' to order the pathways by. Is it possible to change it and order by the Adjusted.P.value? Of course it would be interesting to a…
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Not sure what I'm doing wrong but I have the following in `package.json`:
```json
"hallmark": {
"autolinkReferences": {
"prefix": "#",
"url": "https://gitlab.com/company/projec…
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Hi, nice work.
I'm trying to use your tool but I don't understand the difference between feature.list and compare.list. Could you explain it?
Additionally, I have seen that you have another ver…
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Hi, I am trying to run the gsva on a seurat object with an assembled database form multiple origins. I already tested it with a subset of the seurat object and the subset of the database.
For inst…
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Example:
``` html
{exp:stash:set_list name="companies"}
{stash:company}Fusionary{/stash:company}
{stash:city}Grand Rapids{/stash:city}
{stash:company}Hallmark Design{/stash:company}
{stash:ci…
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Hello,
I've the following AMR format, but it raises a warning and error:
```
# ::tok Hallmark could make a fortune off of this guy .
# ::alignments 0-1.1.1.2.1 1-1 2-1.1 4-1.1.2 6-1.1.2.1.r 7-…
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It looks like I found a bug, and an understatement in the wiki, I don’t even know anymore.
The gist: I'm trying to pass the value of a text input block entered by the user. I need it in exactly t…
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Dr. Fan,
Maybe this is irrelevant to irGSEA, probably more related to the Heatmap package but is there anyway that I can keep the pathway order? It seems like even if I use cluster_row=FALSE param…