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Mainly for the fill values of the matrix.
`hic_obsexp`: A kind of observed over expected transformation for fill values. Would be possible to add a kind of `decay` parameter that takes a vector of …
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I am attempting to run a genome assembly and am running into an issue of the assembly getting killed at the very end. I saw some people having similar issues due to insufficient memory, however the fi…
mabh5 updated
9 months ago
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Hello,
Do you think MAPS can analyze promoter capture HiC data?
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Xiaotao,
This looks like an amazing tool and I would love to give a shot on our newer Hi-C protocol that uses DdeI and DpnII.
I know your code can work with Arima, so is there something you or I can…
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"I installed TADbit but couldn't export the model function. I can run the test set normally."
optional arguments:
-h, --help show this help message and exit
AVAILABLE PROGRAMS:…
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Hi, I want to use Hint TL now, but one problem is the enzymes I can choose in the software are DpnII,MboI,HindIII. We use arima in our experiment, so what should I do if the enzyme is not in the softw…
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Hi authors,
Congratulations for the article and nice work. How did you create/process the raw Hi-C files to create annotate files. It would be really helpful to include the data pre/post process scri…
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Hi,
Thanks for you nice hifiasm!
I have assembled two haplotypes using HiFi and Hi-C reads. Now I will scaffolded the two haplotypes using Hi-C data. Do I need to divide the raw Hi-C reads to two ha…
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Hello IGV developers,
do you think it is possible visualize Hi-C contact matrix on IGV?
Best,
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I don't see any documentation on how to load .cool files in the eg browser. How could I load my cool file stored locally into the browser?
![image](https://user-images.githubusercontent.com/2493060…