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Mainly for the fill values of the matrix.
`hic_obsexp`: A kind of observed over expected transformation for fill values. Would be possible to add a kind of `decay` parameter that takes a vector of …
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Thanks for developing this interesting software! Could you post an example command that shows how to input the hi-c reads into this pipeline?
Thank you!
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Hello,
Do you think MAPS can analyze promoter capture HiC data?
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Hi, developers
I have a question that I would like to ask you. I am assembling an allotetraploid genome (AABB), using the Hi-C mode and obtaining two haplotypes (hap1 and hap2). Are these two h…
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I am attempting to run a genome assembly and am running into an issue of the assembly getting killed at the very end. I saw some people having similar issues due to insufficient memory, however the fi…
mabh5 updated
11 months ago
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Hi all,
i have a bit of a problem when using a modified approach of aligning my Hi-C data with the bwa-mem algorithm.
I'm using HiCExplorer version 3.7.2 and python 3.8.0
When aligning the pa…
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I don't see any documentation on how to load .cool files in the eg browser. How could I load my cool file stored locally into the browser?
![image](https://user-images.githubusercontent.com/2493060…
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Hi, is there Objective-C version for the sdk?
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Hi there, I've learnt your article published on _Nature Methods_. Wonderful job!
It was mentioned in the article that hypo-assembler could optionally attach **Hi-C data** as input, but I couldn't f…
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Hi, I want to use Hint TL now, but one problem is the enzymes I can choose in the software are DpnII,MboI,HindIII. We use arima in our experiment, so what should I do if the enzyme is not in the softw…