-
Some of these look legit, some may arguably be false positives.
I also see some assignments inside of `assert()` calls in the diagnostics (there may be more in the code), which is generally conside…
-
Hi, I want to report a potentially problematic behaviour using pysam.fetch on AWS S3 bucket infrastructure. Using the following pseudo code on a Bam file in a S3 Bucket will create requests without a …
-
I am trying to build the docker image of `deepvariant` but running into problems. I'm on `r1.7` branch and my branch is up to date. I am also facing the same issues on `r1.6.1` branch as well. The com…
-
I have tried running `./build.sh` with HTSlib as a loaded module (on a cluster) and built from source; however, both times I get the same message:
```
checking for a BSD-compatible install... /us…
vymao updated
4 years ago
-
-
I compiled Eagle since I have a Mac and the executable only works on Linux. When I use the make command, I get the following error:
`g++ -O2 -std=c++0x -msse -msse2 -fopenmp -Wall -I/home/pl88/boos…
-
I managed to get samtools 1.2 support added in a `samtools-1.2-cjf` branch (this is based off the `samtools-1.1` branch by @lstein ).
A few clunky things probably need to be cleaned up:
1. The libr…
-
Hi,
I was directed to this repo (and the paper) by a colleague as a resource to validate cgMLST workflows (and similar).
Sadly, it seems this project has fallen into disrepair and I was wonderi…
-
First of all, thank you for creating this structural variant and indel caller!
Is it possible to add configuration options to use externally available zlib, htslib and pyflow, just like using an exte…
roelj updated
7 years ago
-
Hello,
I'm having trouble downloading the cache for the `ARS-UCD1.3` reference genome in Bos Taurus:
```
$ vep_install -s bos_taurus --NO_HTSLIB -a c -c /home/ubuntu/vep --NO_UPDATE --CACHE_VER…