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### How to get the form hierarchy from shacl shapes graph?
SHACL works with a graph of `NodeShape`s and doesn't impose a hierarchy of nodes in the way that jsonschema might do. E.g. with linkml's `…
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There are a few places where the `nmdc-schema` JSON Schema artifact is provided to a `Draft7Validator` (from the [jsonschema](https://python-jsonschema.readthedocs.io/en/stable/) package). [For exampl…
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Showing `todos` in the NMDC schema documentation isn't ideal. These are things we should keep internal.
During a metabolink meeting we decided we needed to add `todos`, but have to put them in the …
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This following this thread (internal Sage Slack): https://sagebionetworks.slack.com/archives/C01ANC02U59/p1712264979812149
Would be worth chatting with Robert and Anh Nguyet in an upcoming sprint.
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Use the examples data file framework
As in, could a `Biosample` have a `neon_study_identifiers` annotation?
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### Discussed in https://github.com/orgs/linkml/discussions/2101
Originally posted by **eecavanna** May 7, 2024
Hi, this is my first time posting a question here.
### Background
I devel…
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command line implementation: `vskit`
to be used with https://linkml.io/linkml/schemas/enums.html#dynamic-enums
see especially https://linkml.io/linkml/schemas/enums.html#tooling-to-support-dynam…
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MIxS is a large schema. There are hundreds of classes (including the checklist/extension combinations) and about 1000 MIxS terms/LinkML slots. Some of the tools that run in our build process are slow,…
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Currently `nmdc-server` maintains a hardcoded list of classes along with meta-information like display names and display statuses: https://github.com/microbiomedata/nmdc-server/blob/ccd899bf07baae6aba…
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start with:
- [x] ctdbase
- [x] ice, toxcast, tox21