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I have this error message:
`######### Running metabolic network reconstruction with Pathway Tools #########
Remove genomes temporary datas.
mpwt could not find the version of Pathway Tools.
It i…
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Hello, first of all thank you very much for this very useful tool. I'm having a little trouble reprocessing my data. I had 7000+ MAGs, and after executing commands in the form required by the software…
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Hi,
My data contains 133 MAGs and 7 set of metagenomic reads. All MAGs are classified into 13 microbial phyla/classes according to functional network and metabolic Sankey diagrams.
But I found tha…
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Hello everyone
So I have run the METABOLIC-C pipeline. However some results are missing.
I don't know why. I configured the data and database correctly. What is my mistake?
Here was the log fil…
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Up to now, `dingo` supports sampling using the uniform, the
multivariate exponential and the multivariate Gaussian distributions.
A quite interesting addition from the biologist-point-of-view wou…
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Hi everybody,
I was trying to utilize the tool on my 38 MAGs, for which I already have carried out taxonomic inferences independently. Is there a way to prevent METABOLIC-C from re-computingtaxonomy …
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Hi,
Currently, i am working with brain metabolic networks in rat and i would like to know if it's possible apply the brainncon to plot the brain connectivity data in rat atlas.
Thanks,
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This thread to serve as a request for a presentation at the next Data Stewards / DCPPC call on Alliance for Genome Resources (AGR) Supplement Aims. Specific Aim 2: "Development of interactive and prog…
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Dear METABOLIC support team,
Is it possible for me to generate the **species** level MN-score_results.txt based on the METABOLIC-C.pl command line below? The I want to plot the species level MN-sco…
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Following curation of PMID:24790093 I think this could be a good paper to try to automate the generation of a Noctua model. We can discuss. See the image below (maybe you even mentioned this paper for…