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Currently shows usage for a custom client, which doesn't translate to `curl` / `requests` / etc.
Correct query for multiple files with `requests`:
```
In [15]: r = requests.get('https://ci.kbase.…
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NMDC has a FY24 Q2 milestone of 'Assembly support for long-read sequence data'. JGI has an existing workflow in WDL which NMDC will adopt.
https://code.jgi.doe.gov/BFoster/jgi_meta_wdl/-/blob/mast…
aclum updated
2 months ago
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- Can a `DataObject` that is the output of any process use any `FileTypeEnum` in it's `data_object_type` slot?
- do the different permissible values come from different axes of differentiation?
- sh…
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I know my input metagenome only contained two strains of a given species, and had been pretty heavily filtered to only have the reads from that species in the metagenome assembly, however, when I perf…
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Hi,
I have used VirSorter2 to identify the viral genomes from the metagenome assemblies successfully. The command I have used was "virsorter run --prep-for-dramv -w DRTY10_201912_sfd_ge10kbp.out_v2 -…
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Hi all,
I found something a bit strange. I was using MetaWrap (ver. 1.2.1 due to availability on institute HPC) for metagenome binning from a megahit assembly, maxbin2 and metabat2 produced bins as e…
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Hi All,
For a large soil metagenome project, we trial-assemble subsets to find the best strategy and settings for megahit.
We assembled 93 Mio PE reads derived from one of the soil samples (Illu…
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Is it possible to use MicrobeAnnotator for an entire metagenome assembly rather than Metagenome assembled genome or genome?
Thank you,
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Hello,
I would very much like to use this tool for binning my Flye metagenome assemblies.
However, I ran into the following error:
```
graphmb --assembly Flye/ --outdir GraphMB --depth depths.tx…
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aclum updated
1 month ago