-
### Name of the tool
MetaPhlAn
### Tool homepage
https://github.com/biobakery/MetaPhlAn
### Tool description
"MetaPhlAn is a computational tool for profiling the composition of microbial communit…
-
There are some Cyanobacteria identified in our nasopharyngeal data (about 3% reads, 2% ASVs; Silva v138). What do you recommend to do with such ASVs? Should I filter them out? Our project is not cyano…
-
_Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379_ does not have a depth parameter on its sample page: https://data.microbiomedata.org/…
-
Seedorf, H.
Griffin, N. W.
Ridaura, V. K.
Reyes, A.
Cheng, J.
Rey, F. E.
Smith, M. I.
Simon, G. M.
Scheffrahn, R. H.
Woebken, D.
Spormann, A. M.
Van Treuren, W.
Ursell, L. K.
Pirrung, M.
Robbins-Piank…
-
I have a collection of metagenomes that were obtained from "freshwater sediment microbial communities" and I'm not entirely sure what ENVO classes to use.
Biome: Freshwater lake? I do not much care…
-
Hello,
I have used tax4fun to predicts the functional capabilities of my microbial
communities on 16S data samples.
It gives a output file as . txt and below how it looks like:
![image](htt…
-
```sparql
PREFIX nmdc:
select distinct ?t (count(?s) as ?s_count)
where {
?s nmdc:type ?t .
}
group by ?t
order by ?t
```
?t | ?s_count
-- | --
ControlledTermValue | 15
ndmc:NomA…
-
Hi,
I would like to know if it possible to obtain this network with SpiecEasi :
![image](https://user-images.githubusercontent.com/18738373/122357256-dc49ee80-cf53-11eb-8e3c-c27f4183bccd.png)
from…
-
Only microbiome data of fecal samples from different groups were used in the article to address the issue of batch effects in data integration. Can NetMoss analysis be used if it is microbiome data of…
-
Any suggestions on how to annotate microbial communities from groundwater? I'd say it's a "freshwater biome" but it's "groundwater" and I expect that to be different from say "lake water". I'm looking…