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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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First of all thank you for a very useful package!
It would be great if you can give some clarifications regarding the following error:
Error in linda: Error in fun(i): task 1 failed - "number of o…
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I have a request for some code. Basically, I want some way to highlight intrapersonal variation through time. I know the within versus between unifrac distances says that variability within an individ…
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Hi Zach,
I have a shotgun metagenomic sequencing dataset consisting of 17 patients that have daily vaginal microbiome samples for a period of 21 days post surgical obstetric fistula repair, and I wan…
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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iHMP? or something else?
it'd be nice if it had a specific set of genome(s)... could do the hu et al one
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Hello Jun,
I used the example of mbznb.test to do differential analysis on the IBD dataset and only 5 OTUs were found to be significant (Padj% mbzinb.results() %>% arrange(Padj) %>% View()**
Thank…
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Here's a list of recent papers we need to be mindful of...
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Hello thanks for developing this interesting tool!
I'm preparing a meta-analysis, and I wanted to explore the eukaryotic component of the microbiome with EukDetect. However, after reviewing the doc…