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**Describe the bug**
The mzML file has spectrums and looks like it is properly formatted, but when I try to open it with pymzml.reader it saids the index isnt found. Ive tried build index from scratc…
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Hello, When I followed the operation method of Visualize FragPipe result and tried to use PDV-2.1.0 to import the search results of Fragpipe, the following error occurred. How should I solve it?
![4…
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Hey, I'm having an issue running DIA-NN with an mzML input file converted from Thermo DIA Raw file. I'm using a spectral library generated by DIA-NN with `--gen-spec-lib` (which was successful). I als…
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I'm currently using `MsBackendHdf5Peaks` backend to load several `mzML` files simultaneously:
```R
fls
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```
What steps will reproduce the problem?
1. Try opening this file:
http://ms.cs.umt.edu/data/mouse_5500_7250_600_637.mzML
What is the expected output? What do you see instead?
The expected outp…
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- Describe the issue or question:
Enabling writing sub-mzML fails with FragPipe v21 when the source MS data file is not an mzML file, but does work on v20.
The relevant snippet from the log file…
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Hi Fengchao,
I am working on proteomics data using FragPipe (with IonQuant) and processing a dataset of 1392 mzML files. The analysis proceeds smoothly until IonQuant runs into an out-of-memory err…
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```
What steps will reproduce the problem?
1. Try opening this file:
http://ms.cs.umt.edu/data/mouse_5500_7250_600_637.mzML
What is the expected output? What do you see instead?
The expected outp…
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Hi,
I wish to parse .mzData.xml files from Agilent to extract a RT x m/z matrix, I've correctly installed the mzR package but I obtain this issue: Error in .mzRBackendFromContent(x) :
Could not …
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Hello,
I have converted my wiff and wiff.scan files in mzML (peak picking vendor MS level -1; 32bit; TPP compatibility)
And, with FragPipe, I would like to use DIAUmpire to convert my DIA data in p…