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Is it possible to let kmc read sra files?
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per luiz:
we have a new champion! https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR21113412&display=metadata is the largest signature in wort, 4.1GB :joy:
trace.ncbi.nlm.…
ctb updated
12 months ago
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I ran STARsolo like the code below on google colab pro with a human kidney transplant rejection biopsy sample scrnaseq by 10X 5' chromium v3.1
The output I got was a 700mb bam file and barcodes.tsv, …
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I wonder if there is an option (with a command line) to get some useful global information on an accession ID as how many mates we have (single / paired / technical) and how many reads we have, what i…
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hi,
Looking up at the [server](https://dee2.io/huge/hsapiens) files for human, apparently, there have not been new samples added to the DEE2 pipeline since 2021. For that reason, I want to run the …
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Hello,
I've been using [bionode-ncbi](https://github.com/bionode/bionode-ncbi/blob/master/lib/bionode-ncbi.js) to get SRR ids from a `PRJ**` IDs so I don't have to look for each file individually (ex…
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```
http://www.ncbi.nlm.nih.gov/sra/?term=SRP027504
http://www.ncbi.nlm.nih.gov/sra/?term=SRP026668
```
mr-c updated
10 years ago
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The community is confused about the versioning used for SKESA since SAUTE was released.
Because it's always SKESA 2.4.0 even when SAUTE was added, the packaging (eg. conda) is hard to get updated.
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I've hit an odd issue where `fastq-dl` pulls FASTQs without issue, but they are in SRA Lite format instead of the typical SRA Normalized format.
FASTQs in SRA Lite format have `?` for all Qscores f…