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Dear seqinr team
I have a request.
I am designing PCRs for different phylogenetic levels based on a few hundred sequences. For that purpose it had been handy to have a consensus sequence with IU…
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### Description of feature
Currently different analysis software in ARG screening workflow use different input sequences.
For instance, AMRFinderPlus and RGI use nucleotide sequence as input whereas…
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I have a set of nucleotide sequences and I need the pairwise sequence similarity of all vs all.
I understand that one should create a fake_pref and use it to run mmseqs align. Yet, in the document…
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Hey Joel,
Hope you are doing well! Found a funky bug in the nucleotide sequence output from enrichm annotate. Here's an example:
\>contig_112_pilon_1
TATTTAGTTAATATGTCATTTATATCTTTTGCATTTAGAGAA…
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Hello Author, I want to ask a question. I noticed that the input sequences for diamond need to be amino acid sequences. However, my whole genome sequences are nucleotide sequences.
I would like to…
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Staphilococcus pyogenes Cas9 has an NGG PAM, but Staphilococcus aureus Cas9 has an NNGRRT PAM. While N means any nucleotide, R means A or G. We should support this notation so users can input a human-…
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Instead of doing global alignment on whole genome sequences, align just the searched subtype ORF sequence to the full query sequence.
The searched subtype ORF sequence should be prefixed and suffix…
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#### Summary:
The complete nucleotide sequence retrieved from NCBI is written to the output, including any terminal stop codons.
These sequences often cannot be used for backthreading onto aligned p…
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Hello,
Thanks for creating this tool! I've used it previously with RNA002 sequences, and the m6A output data used to reach the 3' end of my reads, however, with the RNA004 data, it now stops about …
esh97 updated
2 months ago
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## Expected Behavior
After using “mmseqs easy-linclust” clustering, the retained sequence is non-redundant
## Current Behavior
After using “mmseqs easy-linclust” clustering, he retained seque…