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Phigaro currently uses the GC score in a way that prophages are more likely to be GC-rich (i.e. genes have high GC content) than GC-poor. Although the benchmarking suggests this is a good approach it …
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Hi.
Thank you for making this amazing tool.
I am currently using this tool to improve my metagenomic viral contigs obtained from MegaHIT.
So, I have 80 shotgun metagenomic samples which I did…
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Hi Felipe,
Could you help with this issue I've got when running bacannot everything went just fine except the pipeline arrives that step. I tried twice with differents genomes and it fails at the sam…
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Wrap up all the work in dev branch and release v3.3.
Needs:
- [x] #50
- [x] #69
- [x] #81
- [x] #85
- [ ] #30 (Maybe)
- [x] #98
- [x] #100
- [x] #102
- [x] #104
- [x] #107
- [x…
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I'm so happy that the question which I mentioned before about [virsorter2](https://github.com/replikation/What_the_Phage/issues/169#issuecomment-1214987138) was solved. By the way, previous quention a…
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Hi,
I ran this.
`nextflow run replikation/What_the_Phage -r v1.0.3 --no-check-certificate --cachedir ./singularity_images/ --setup -profile local,singularity --workdir ./work --databases ./nextflow-…
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Phigaro is a wonderful tool, but I could not download the database. The link 'http://www.download.ripcm.com/phigaro/' seems not work due to unknown reasons. I'm not sure whether the problem is from th…
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Hi Felipe,
Could you help with this issue I've got when running bacannot o my genomes, everything went just fine except the report step. I tried with my old genomes (which were successful at the time…
fetyj updated
2 years ago
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Hellow! I have successfully run wtp using example data on my computer, while the calculation of my own sample seems not finish completely. Here is the wtp report and the screenshot of the results dir.…
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Greetings,
I am trying to reproduce the tutorial (https://mattiapandolfovr.github.io/MetaPhage/tutorial), and I got the following errors at the stage of downloading the databases:
`./bin/python/…