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My dear friend Edison,
when I run ./Train.sh I get this error:
```
VaxML % ./Train.sh /Users/ab/smallPOS.fasta /Users/ab/smallNEG.fasta /Users/ab/out g-
Saving results to /20220607144338_pso…
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Hello, if I just want to get the fingerprint descriptor, should I modify "MaSIF_site.py"?Corresponding to fig.1d MaSIF-geometric deep learning in the paper
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Hi @VSainteuf , I am curious if it is possible to find specific crop types based on the your scripts? For example, I might be interested only in rice, or cannabis detection... If yes, could you please…
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There are at least two dozen bacterial sequences of concern that bind host plasminogen to their surfaces. This bound plasmin is generally converted to plasmin which can then mediate serum resistance f…
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Some options were defined in for using the model (retro-inhibition of sugars in Ag ; surfacic N vs surfacic proteins). The model should be recalibrated to work with last features only
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I am working with APBS calculations on a set of interesting proteins. Briefly, what I want is an _explicit_ representation of the potential at the protein's solvent accessible surface area—that is the…
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# Ligand SASA in Protein Pocket | Sunhwan Jo
An example of computing Ligand SASA (solvent-accessible surface area) in protein pocket using RDKit
[https://sunhwan.github.io/blog/2021/02/04/RDKit-Prot…
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I have just read the paper cited at the end, and it convinced me about the potential of monolinks as a source of experimental information regarding surface accessibility. As suggested there, this may …
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Hi,
thank you very much for making this available! I am using this together with RFDiffusion to create small protein complexes and the interfaces look very good in many cases. However, I found that …
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## *Repository Creation Request*
1. #### Coordinating Institute: Indian Institute of Technology Kharagpur
2. #### Approved Proposal: [Experimental Biochemistry](https://drive.google.com/file/…