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From branch 99 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+T17859C+C3172T+S:R346T,F456L
Query: T17859C,T22928C,T3172G,T3565C
No. of seqs: 22 on UShER (Portugal 4 S…
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Portugal is experiencing a steep wave of infections , interestingly the lineage proposed below is coming from there and carries a recently convergent mutation S:V62F (see recently designated Jn.1.62 a…
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There seem to be several people in the introductions thread (#17 ) who are interested in zoonotic diseases, a topic that is currently missing from [the introduction section outline](greenelab/covid19-…
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![Screenshot 2024-06-03 at 12 03 46 PM](https://github.com/glygener/glygen-issues/assets/13891482/48d591be-6bf0-49cc-bc5f-c5e0d733af06)
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From branch 48 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C10078T,T14526C,C21911T+S:F456L
Query: T22928C,C10078T,T14526C
No.of seqs: 35 seqs (Australia 23 Germany…
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Defining mutations:
KP.2.2 > T24364C > ORF1a:K2660R (A21446G), S:T22N (C21627A)
NEW QUERY: A21446G,C21627A (_old query :T24364C ,A21446G,C21627A_)
Samples: 10
Country: US, France
Tree:
https…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
Branch 11: 332 seqs, last sample was on 13 June 2024
[usher](https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/singleSub…
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Formerly tracked as Branch 63 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097
and for FLiRT>Trio branch as Branch 111 of https://github.com/sars-cov-2-variants/lineage-propos…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1601
**Description**
**Sub-lineage of:** LB.1.3 (S:∆S31, Q183H, R346T, F456L)
**Earliest sequence:** 2024-4-29, Fra…
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From branch 62 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+G17562T+S:F456L
Query: G17562T,T3565C, T22928C,-8716
No. of seqs: 62 (Australia 1 Canada 13 China 1 Denm…