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I have noticed in some recent downloads that there are sequences included in the alignment that likely should have been dropped during the filtering process. In the two attached plots of alignments th…
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I am working on a CRISPR data treated by two sgRNAs and sequenced with targeted sequencing. The distance between the two sgRNA is 3000bp which is much longer than amplicon. The targeted area is the w…
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Hello,
I am experiencing the following problem all of a sudden:
"100000 alignment records processed.
200000 alignment records processed.
300000 alignment records processed.
Error occured when…
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Hi @haowenz,
I tend to not force use of the 10X barcode include-list since it is possible there could be valuable information/real cells, but I noticed that some scATACseq data processed via `chromap…
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Please add the extension for [DNA Derived Data](https://rs.gbif.org/extension/gbif/1.0/dna_derived_data_2024-07-11.xml) to the DWC export to GBIF.
The fields to export here are:
`DNA Barcode ITS` ->…
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Have you ablated the three stage training setting?
If I only train the model using stage 1 and 2, will the performance change a lot?
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I am trying to align reads from [ERR1679839](https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR1679839) and [ERR1679840](https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR1679840) and keep encounterin…
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The sequence TRM345 (NCBI GenBank: PP852943) in the current Mpox build is highly divergent, with low coverage and quality. Suggesting its removal from the mpox build. Might also be worth considering a…
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### 🚀 The feature, motivation and pitch
Verifier/reward models are going to be very important moving forward for building:
- High quality synthetic data pipelines
- Verifying model reasoning
- M…
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when i use the code "fastp -i /Users/lubo/YY17/CoixCoix_L766-01-T16_good_1.fq -I /Users/lubo/YY17/CoixCoix_L766-01-T16_good_2.fq -o /Users/lubo/YY17/Coix_T16_1.fq -O /Users/lubo/YY17/Coix_T16_2.fq" to…