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[metaviralSPAdes: assembly of viruses from metagenomic data](https://pubmed.ncbi.nlm.nih.gov/32413137/)
> MOTIVATION: Although the set of currently known viruses has been steadily expanding, only a …
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> Millions of human genomes and exomes have been sequenced, but their clinical applications remain limited due to the difficulty of distinguishing disease-causing mutations from benign genetic variati…
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Hi,
I'm trying to run masurca with a hybrid assembly of illumina PE and Nanopore data and I get the following error after running the config file:
Error line 23 of configuration file 'sr_config…
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I have some metatranscriptomic data and I want to run it through ARGs-OAP, is this reasonable?
If not, any other suggestions would be greatly appreciated.
Thank you so much for taking the time to re…
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The current G2P schema has a VariantSet as the subject of the annotation.
According to the variants.avdl, a variant is part of a variantSet, but not the other way around. As in, it doesn't seem tha…
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Hello,
I'm very excited to test and assess the quality of our phased assembly (FALCON-Unzip -> FALCON-Phase).
However due to the nature of our system we are unable to acquire the parents of our sequ…
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#### Summary:
Basically, there is sometimes 100+ genomes fetched from a taxonomic ID (even at species lvl)
genbank_get_genomes_by_taxon.py
Is it possible to add an option like:
genbank_get_gen…
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Hello,
I found that this software was used to assemble a polyploid plant and I am wondering if it could work as well in my case.
I have 4 plant genomes (sequenced at about 20x, PE libraries up to 45…
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Hello, I'm using BRAKER3 to annotate the genomes of several a fungi, I have several species. The problem is that for some of them the Augustus files are not generated or are empty files, and I don't k…
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Interop Contact:
Active in 2021: Active
**Researchers**: Xihong Lin (Harvard T.H. Chan School of Public Health)
## Analysis Question:
Large-scale Whole Genome Sequencing (WGS) studies and biobanks h…