-
Sub-task of #2
- [ ] 2a. Kriegstein "6k" human cortex development single-cell RNA-seq (SMART-seq)
- [ ] 2b. Darmanis/Quake human cortex development single-cell RNA-seq (SMART-seq)
- [ ] 2…
-
A recurring feature request — provide automatic chemistry detection, at least in the case where we know that the input data is 10x. This would look something like passing `-c auto10x` and `simpleaf` …
-
-
**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
-
Hello,
After running your software, I noticed that some beads were classified as originating from the same cell. Could you please explain how this determination is made? Specifically, I'm curious a…
-
Hi Shuangshuang,
Considering a gene can produce multiple transcripts, is there a method to obtain a transcript counting matrix instead of a gene-based one during data preprocessing?
Thank you!
-
Sub-task of #2
[several datasets in this space -- maybe choose 1-2]
- [ ] 4a. Vaccarino PsychENCODE 2018 organoids
- [ ] 4b. ...
-
Published: https://doi.org/10.1093/nar/gkx681
Preprint: https://doi.org/10.1101/129759
> While only recently developed, the ability to profile expression data in single cells (scRNA-Seq) has alr…
-
Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#8)
- [ ] in vivo cortex development single-cell RNA-seq (#9)
- [ ] stem cell models of human cortex developm…
-
Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…