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Hi!
First of all, thank you for the great tool.
I have single-cell RNA sequencing (cell-ranger) data for e.g 3 donors (=> 3 bam files, one per donor), as well as pooled scRNA-seq data for the sa…
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Well explained tool for Single-cell RNA seq data normalisation !
Hi,
So we are normalising the Single-cell RNA seq data and we now have to normalise the allelic read counts. Scnorm seems to b…
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Hello, Dr. He. Sorry to bother you again.
I already knew that SEVtras would work with single cell RNA sequencing data produced by the 10x genomics chromium , which is based on droplet sequencing, but…
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I think your proposed experiment is well designed, has an adjustable scope that you can expand on later down the line, and has very clear short- and long-term goals.
I have a minor proposition. Wha…
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作者您好，非常令人深刻的工作，目前我在重复示例相关工作时，通过Linux系统首先通过Conda建环境，包括用conda安装GenomicRanges和IRanges，在JupyterLab下面运行示例代码：
```
system.time(
#1.start to run the wrapper functions for example.
Pagwas_data
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Hi,
CCPE is a useful tool to compute cell cycle pseudotime using single-cell RNA-seq data with ground truth. I also found that the paper described that CCPE could be used to analyze datasets without …
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Sub-task of #2
- [ ] 2a. Kriegstein "6k" human cortex development single-cell RNA-seq (SMART-seq)
- [ ] 2b. Darmanis/Quake human cortex development single-cell RNA-seq (SMART-seq)
- [ ] 2…
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**Background**
The script addon.py already have functions for preprocessing, normalization, clustering, cell type prediction, gene list for cells/tissues, gene expression per cell types, DEG per tiss…
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A recurring feature request — provide automatic chemistry detection, at least in the case where we know that the input data is 10x. This would look something like passing `-c auto10x` and `simpleaf` …
rob-p updated
1 month ago