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### Publication and Data Information
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA516042
### Additional Information
### Checklist
See [New Genome Documentation](https://github.com/mestato/stat…
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### Description of feature
I have downloaded subreads.fastq.gz file from SRR. I have tried Picard, sam-dump, reformat.sh to convert to unaligned.subreads.bam file so that I can run CCS.
However, see…
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Command: G:\Utils\sratoolkit.3.0.7-win64\bin>fasterq-dump.exe SRR11184930.sra --fasta -p -e 12 -O G:\DNA\Kazan
result:
lookup :|-------------------------------------------------- 100% …
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When ran doctor.py I got fastq-dump error, below.
doctor.py
# Doctor! Doctor! Give me the news.
# Checking symptoms ...
# bwa ... OK
# datamash ... OK
# fastqc -h ... OK
# …
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Do we still need the six.moves library for urlretrieve?
https://github.com/NAL-i5K/NAL_RNA_seq_annotation_pipeline/blob/update-rnannot/rnannot/RNAseq_annotate.py#L12
This might be a moot issue i…
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I didn't see a thread/doc describing how to use an authenticated proxy server to use sra-tools. If there are something available and if I missed it, please point me the same.
I am using `sratoolkit.…
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Hey All,
I am interested in extracting out the fastq reads of accession ids. But I cant find the element FtpPath in the document summary information.
I am trying something like this-
`esearch -db…
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Currently, only proxy host and port settings can be configured but no authentication.
At least BASIC authentication should be implemented.
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caravel could have a tab that provides access to `geofetch` functions.
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http://www.cell.com/cell-systems/abstract/S2405-4712(15)00113-1
@arahuja looked into this a few months and said it still wasn't in dbGAP